Molecular Mechanisms & Pathways projects

Applications for fully-funded 4 year PhD studentships starting in Sept 2026 are now closed

For studentships starting in Sept 2027, projects to apply to will be advertised in Oct 2026

Below are projects that were advertised for studentships starting in Sept 2026.  We are no longer accepting applications to these projects, but remain viewable to give a flavour of the types of projects across the DTP.  Exception: If you have external-funding (including self-funding), these projects are still available to apply to – further information.

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The research theme encompasses the following areas.  Click on the link below to be taken to these projects, or scroll though our full list of projects below.

This theme encompasses:

  • most cellular and subcellular biology across the evolutionary scale, including all aspects of gene function, protein structure, cytoskeletal and membrane systems, and cell transport and motility. Also includes development and application of complex cell/tissue-based models for advanced mechanistic research.
  • whole animal systems as research models, looking at development, physiology and function. It also includes ethical considerations and procedural aspects.
  • all aspects of learning and behaviour and sensory biology, from neurobiology function through to higher brain decision making.
  • molecular regulation of complex cell autonomous and non-cell autonomous signalling pathways, including transcriptional responses and epigenetic control.

*CASE: These are CASE DTP studentships. As part of the programme, you will be required to undertake a placement with the CASE partner for a minimum of 3 months.

*AP: These are Standard DTP studentships with an associate partner where you will be required to spend time with each of the partners. You will be registered for your postgraduate studies at one of the partner universities of the lead supervisors.  

*JD: This project is in collaboration with the University of Bristol and the University of the West of England (UWE) and subject to a joint degree award. Successful applicants will be registered at both these institutions, and graduates will be awarded a joint degree from these two institutions upon successful completion of the PhD programme.

The 'host institution' is where you will be mainly based throughout your PhD.  Of note, some projects may involve fieldwork or time away from the listed host institution for e.g. time spent with others within your supervisory team, collaborating university, collaborator or on a CASE/PIPS placement.

To help you decide on your PhD project, you can gain a detailed insight into the working style of the main supervisor and the research environment you will be part of, by visiting our meet our supervisors webpage or ‘clicking’ on the supervisor listed in bold below. You can also find out more about the second supervisor by ‘clicking’ on their name below.

Advanced Cell & Tissue Models

ID PROJECT TITLE

MAIN SUPERVISORY TEAM

Main supervisor (bold) + second supervisor – Or equivalents 

HOST INSTITUTION

(also the registered university unless otherwise stated)

STUDENTSHIP TYPE

KEYWORDS
271 Defining a role for mTORC1 in regulating focal adhesions and cell migration

Dr Matt Jones

Dr Bernadette Carroll

University of Plymouth/University of Bristol

Registered University: University of Plymouth

Studentship type: Standard with Associate Partner

mTOR, Integrin, Adhesion, Migration, Cell Biology
290 Development of mRNA-Loaded Lipid Nanoparticles For Targeted Elimination of Cancer Stem Cells in complex 3D models.

Prof Peter Watson

Prof Arwyn Jones

Cardiff University

Studentship type: Standard

Translational Biosciences, Enabling Technologies, Advanced Cell Models, Drug Discovery & Delivery, Bioimaging
240 How to make an eye – Mechanics of optic cup formation across species

Dr Stefan Harmansa

Prof Andrew Quantock

University of Exeter (Streatham)

Studentship type: Standard

Development, Morphogenesis, Biophysics, Mechanics, High-resolution microscopy
289 Microbial metabolites as signals for gut cell communication: mapping epithelial signalling and developing rapid readouts in model systems

Dr Alexander Greenhough

Dr Alexandros Stratakos

University of West England (UWE)

Studentship type: CASE

Epithelial barrier function, gut microbiome, intestinal inflammation, microbial metabolites, molecular diagnostics
134 Modelling the Emergence and Maturation of Primitive Blood Lineages ex vivo Using Primate Stem Cell-Based Models

Dr Ge Guo

Dr Thomas Piers

University of Exeter (Streatham)

Studentship type: Standard

Stem cell, embryo model, molecular signalling, immunology, neuroscience
85 Peroxisome-organelle interplay under cellular stress conditions

Prof Michael Schrader

Prof Wendy Noble

University of Exeter (Streatham)

Studentship type: Standard

Molecular cell biology, organelle biology, protein biochemistry, biomedicine
209 Signalling mechanisms regulating lysosomal membrane integrity and quality control

Dr Bethan Lloyd-Lewis

Dr Bernadette Carroll

University of Bristol

Studentship type: Standard

Cell Biology, Molecular Biology, Lysosomes, Cell Signalling, Microscopy

Physiological Systems & Neuroscience

ID PROJECT TITLE

MAIN SUPERVISORY TEAM

Main supervisor (bold) + second supervisor – Or equivalents 

HOST INSTITUTION

(also the registered university unless otherwise stated)

STUDENTSHIP TYPE

KEYWORDS
98 Brains, Blades, and Zebrafish: Dissecting Rhomboid Protease Roles in Neuronal Development and Signalling

Prof Chrissy Hammond

Prof Steffen Scholpp

University of Bristol

Studentship type: Standard

Neurodegeneration, zebrafish, proteomics, synapse, iPSC, CRISPR
59 Building bridges between immunity and memory: unveiling novel roles of antimicrobial peptides in neural function.

Dr Tamara Boto

Dr Mark Hanson

University of Bristol

Studentship type: Standard

Memory, antimicrobial peptides, Drosophila, neuroscience, neuroinflammation
109 Characterizing the role and function of lipid droplets in neuronal metabolism.

Dr Maria Victoria Niklison Chirou

Dr Tim Craig

University of Bath / University of West England (UWE)

Registered University: University of Bath

Studentship type: Standard with Associate Partner

Lipid droplets, neurones, lipolysis, metabolism, neurotransmission.
268 CircadiAgeing: Clock excitability, circadian rhythms and healthy ageing

Prof James Hodge

Prof Krasimira Tsaneva

University of Bristol

Studentship type: Standard

Circadian rhythms, Clock neuron excitability, Ion channel activity and modelling, Model systems: fly and mouse, Dynamic clamp
282 Creating a functional map for brain-gut signalling in a simple worm model

Dr Elizabeth Williams

Dr Alex Corbett

University of Exeter (Streatham)

Studentship type: CASE

High throughput-screening, Fluorescence Microscopy, Neuroscience, Animal behaviour, Molecular biology
199 From Flies to Human Cells: understanding astrocyte reactivity and dopaminergic modulation in brain injury

Dr Oscar Cordero Llana

Dr Tamara Boto

University of Bristol

Studentship type: Standard

Neuroinflammation, Astrocytes, Dopamine, iPSC, Drosophila
291 How Astrocytes Shape Learning in Brain and AI Networks

Dr Joël Tabak

Dr Jonathan Witton

University of Exeter (Streatham)

Studentship type: Standard

Glia, brain computation, neural networks, deep learning, in vivo imaging
264 How does the cerebellum process thoughts and feelings to guide healthy behaviour?

Dr Paul Chadderton

Dr Paul Anastasiades

University of Bristol

Studentship type: Standard

Neuroscience, Neurodiversity, Emotional brain, Cognition, Imaging
245 How neurons know a visual cue is predicting a reward

Dr Yanfeng Zhang

Dr Joël Tabak

University of Exeter (Streatham)

Studentship type: Standard

Superior colliculus, dopamine, serotonin, classical conditioning, synaptic plasticity
345 Investigating galanin regulation of pancreatic islet hormone secretion in live zebrafish

Dr Yu Hsuan Carol Yang

Dr Kyle Wedgwood

University of Exeter (Streatham)

Studentship type: Standard

Pancreatic islet function, intercellular communication, neural signalling, calcium dynamics, zebrafish model
292 Investigating the antilypolytic and hypoglycaemic effect of exogenous ketones in humans.

Prof Francis Stephens

Dr Alistair Monteyne

University of Exeter (St Luke’s)

Studentship type: Standard

Physiology, Nutrition, Metabolism, Skeletal muscle, Adipose
261 Investigating the Effects of Diabetes and Obesity Medications on the Brain-Kidney Axis

Dr Michael Greenwood

Prof Steven West

University of Bristol

Studentship type: Standard

Neuroscience, Physiology, Molecular biology, Proteomics, Genome-wide association study
272 Population shape, microstructure and mechanics: towards personalised eye models

Dr Daniela Oehring

Dr Craig Boote

University of Plymouth / Cardiff University

Registered University: University of Plymouth

Studentship type: Standard with Associate Partner

Ocular biomechanics, Collagen microstructure, Finite element modelling, Statistical shape modelling, Biophysics
186 Probing sleep as a regulator of emotional memory and behaviour

Dr Ross Purple

Dr Emma Cahill

University of Bristol

Studentship type: CASE

Neuroscience, pharmacology, behaviour, sleep, stress
352 Suspended animation: waking sleeping beauties.

Dr Carla Frare

Dr Hermes Gadelha

University of Bristol

Studentship type: Standard

Torpor, Mathematical Biology, Neuroscience, Network, Physiology
221 Understanding pattern separation in the hippocampal dentate gyrus: a pathway to preserving memory

Dr Denize Atan

Prof Marc Goodfellow

University of Bristol

Studentship type: Standard

Neural networks, Electrophysiology, Optogenetics, Computational modelling, Advanced Imaging

Molecular & Genetic Pathways

ID PROJECT TITLE

MAIN SUPERVISORY TEAM

Main supervisor (bold) + second supervisor – Or equivalents 

HOST INSTITUTION

(also the registered university unless otherwise stated)

STUDENTSHIP TYPE

KEYWORDS
172 Chromatin-mediated control of morphogenesis and virulence in Aspergillus fumigatus

Prof Elaine Bignell

Dr Sandra Catania

University of Exeter (Streatham)

Studentship type: Standard

Chromatin, developmental biology, microbiology, Epigenetics, genomics
354 Deciphering the Role of TET Enzymes in regulating stem cell potency and fate commitment

Dr Tomasz Jurkowski

Dr Nathan Harmston

Cardiff University

Studentship type: Standard

Epigenetics, DNA methylation, DNA demethylation, DNA repair, stem cell biology

 

160 Dissecting the Link Between Lipid Peroxidation and Platelet Receptors in Thrombosis.

Dr Maria Shchepinova

Prof Stuart Mundell

University of Bath

Studentship type: Standard

G protein-coupled receptors (GPCRs); bioinformatics; molecular biology; proximity proteomics; protein networks.
158 Enhancer Editing in Human Stem Cells: CRISPR Perturbation and Chromatin Profiling

Dr Sean Flynn

Dr Keith Vance

University of Exeter (St Luke’s)

Studentship type: Standard

Chromatin, enhancers, stem cells, CRISPR, gene regulation
213 Epigenetics of the brain in healthy ageing

Dr Anna Migdalska-Richards

Prof Katie Lunnon

University of Exeter (St Luke’s)

Studentship type: Standard

Epigenetics, genetics, bioinformatics, computational and mathematical modelling, cell models

 

107 Evolutionary mechanisms underlying differences in the innate immune response

Dr Mark Hanson

Dr Ben Longdon

University of Exeter (Penryn)

Studentship type: Standard

Innate Immunity, Host-pathogen interactions, Molecular evolution, Phylogenetic modelling, Genetics
116 How do neurons interpret epigenetic information in DNA?

Dr Jack Hardwick

Prof Jonathan Mill

 

University of Bristol

Studentship type: Standard

Epigenetics, DNA-protein interactions, proteomics, neurodegeneration
142 Imaging the birth and life of gene transcripts in vivo

Dr Nikolas Nikolaou

Prof Robert Kelsh

University of Exeter (Streatham)

Studentship type: Standard

Gene expression, mRNA processing, neural crest, motor neurons, zebrafish
255 Impact of plant extracellular vesicles (PDEVs) on gastrointestinal cells *JD

Dr Jacqueline Barnett

Dr Adam Chambers

University of West England (UWE) / University of Bristol (Registered at both: joint degree award)

Studentship type: Standard with Associate Partner

Plant derived extracellular vesicles, gastrointestinal cells, biological interactions, molecular mechanisms
275 Investigating a potential mechanism for mammary epithelial cell dynamics *JD

Dr Liliana Ordonez

Prof Claire Perks

University of West England (UWE) / University of Bristol (Registered at both: joint degree award)

Studentship type: Standard with Associate Partner

Biological interactions, Hyperglycaemia, Hypoxia, Hormonal influences and Mammary epithelium
239 Investigating novel interactions of the Merlin gene in cell behaviour

Prof Benjamin Housden

Prof David Parkinson

University of Exeter (Streatham) / University of Plymouth

Registered University: University of Exeter

Studentship type: Standard with Associate Partner

Cell culture, molecular biology, biochemistry, statistical analysis, in vivo

 

305 Mapping the epigenetic landscape in cells under compressive forces

Dr Julia Sero

Dr Despina Moschou

University of Bath

Studentship type: Standard

Microfluidics, mechanobiology, epigenetics, mathematical modelling, gene expression
167 Mapping the Regulatory Landscapes of Annelid Genomes using comparative genomics

Dr Nathan Harmston

Prof Peter Kille

Cardiff University

Studentship type: Standard

Comparative genomics, genomics, gene regulation, annelids
64 Mechanical regulation of secretory pathway structure and function

Dr Nicola Stevenson

Dr Emma Blain

 

University of Bristol

Studentship type: Standard

Cell biology, signalling, mechanobiology, secretory pathway
211 Mechanisms of mechanosensation and membrane tension modulation in red blood cell development *JD

Dr Tim Satchwell

Prof Ashley Toye

University of West England (UWE) / University of Bristol (Registered at both: joint degree award)

Studentship type: Standard with Associate Partner

Red blood cell, erythropoiesis, mechanosensor, membrane tension, cell biology
365 Molecular Pathways of Viral Manipulation of Cellular Immunity

Prof Richard Stanton

Dr Ceri Fielding

Cardiff University

Studentship type: Standard

Virology, Immunology, Bioinformatics, Biological Interactions, Immunological Pathways
288 Reconstructing ancestral animal cell types by a single cell analysis and comparative genomic approach

Dr Jordi Solana

Dr Jordi Paps Montserrat

University of Exeter (Streatham)

Studentship type: Standard

Stem Cells, Single Cell Transcriptomics, Evolution, Systems Biology, Bioinformatics
178 Ribosome specialization as a regulator of gene expression

Dr William Faller

Prof Christiane Berger-Schaffitzel

University of Bristol

Studentship type: Standard

Ribosome specialization, mRNA translation, Organoids
267 Targeted Protein Degradation as a Cutting-Edge Tool to Study Tyrosine Kinases in Platelet Signaling and Function

Prof Ingeborg Hers

Dr Robin Corey

University of Bristol

Studentship type: Standard

PROTACs, protein degraders, platelets, tyrosine kinases, molecular modeling
185 The 5’UTR and mRNA translational repression

Prof Helen White-Cooper

Dr Nathan Harmston

Cardiff University

Studentship type: Standard

mRNA Translation, Spermatogenesis, Drosophila, Developmental Biology, Bioinformatics
273 The fitness effects of loss-of-function mutations in bacterial populations

Prof Edward Feil

Dr Sion Bayliss

University of Bath

Studentship type: Standard

Whole Genome Sequencing, Adaptation, Mutation, Bacteria, Bioinformatics, Loss-of-Function
163 The role of reductive evolution in the origin of eukaryotic cells

Prof Tom Williams

Prof Philip Donoghue

 

University of Bath

Studentship type: Standard

Evolution, phylogenetics, origin of eukaryotes, symbiosis, reductive evolution
296 Understanding the molecular mechanisms of environmental and chemical stressors on pigmentation in larval zebrafish

Dr Jonathan Ball

Dr Karen Camargo Sosa

 

University of Exeter (Streatham)

Studentship type: CASE

Molecular, Zebrafish, Pigmentation, Expression, Development
246 Understanding the Post-Endocytic Sorting of Cannabinoid Receptors in Neurons

Dr Kevin Wilkinson

Dr Maria Shchepinova

University of Bristol

Studentship type: Standard

Cannabinoid Receptor, Endocannabinoid System, Endosomal sorting, Synapse, Neuroscience.

Other

ID PROJECT TITLE

MAIN SUPERVISORY TEAM

Main supervisor (bold) + second supervisor – Or equivalents 

HOST INSTITUTION

(also the registered university unless otherwise stated)

STUDENTSHIP TYPE

KEYWORDS
233 Coordination Between Actin and Microtubule Motors During Endocytosis

Dr Ferdos Abid Ali

Dr Mark Dodding

University of Bristol

Studentship type: Standard

Cytoskeleton, endocytosis, intracellular trafficking, cryo-EM, molecular motors
169 Decoding DNA Repair: Molecular Insights into Sequence-Specific Recognition

Dr Georgina Menzies

Prof James Platts

Cardiff University

Studentship type: Standard

DNA structure, DNA repair, Molecular Dynamics, Computational Biology
159 Genome packaging as a driving force of RNA virus assembly

Dr Harriet Mears

Dr Thomas Sharp

University of Bristol

Studentship type: Standard

Virology, RNA, biological interactions, virus assembly, biochemistry
270 Spindle orientation in the developing fly embryo: a joint mathematical-experimental approach

Dr David Richards

Prof James Wakefield

University of Exeter (Streatham)

Studentship type: Standard

Drosophila development, spindle orientation, mathematical modelling, computer simulation, image analysis